PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12586_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 327aa MW: 37224.2 Da PI: 6.3224 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117 | 2.4e-36 | 84 | 218 | 2 | 124 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg....... 88 ++kkdrhskihT++g+RdRRvRls+ +a++fFdLqd LGf k+s+t++WLl+++ +ai el++++ ++++ + +++++ ++n + RrC12586_p1 84 TVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDVLGFGKASETLDWLLKKSRRAINELAQDKKLNSKDEdfgnNRGDEEEDEDNG--Dksfvygl 179 79**************************************************************444442222333222222222222..23467788 PP TCP 89 ..kaaksaa.kskksqksaasalnlakesrakararare 124 +++++ + kk++k++ s l ++sr k+++ r+ RrC12586_p1 180 spDSCEEVVcEVKKTEKNNISSKGLREKSRGKSKQITRK 218 776666666444444444444444444555444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-34 | 85 | 216 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.661 | 86 | 144 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQS TIRNPYNHQS TASPGQMVSA VPESLIDYMS 60 FNSNTAVNQQ GFEIPEVSRE IKKTVKKDRH SKIHTAQGLR DRRVRLSIGV ARQFFDLQDV 120 LGFGKASETL DWLLKKSRRA INELAQDKKL NSKDEDFGNN RGDEEEDEDN GDKSFVYGLS 180 PDSCEEVVCE VKKTEKNNIS SKGLREKSRG KSKQITRKMT YDHPETVSKI TQTEIMDPFK 240 SSIIFNEGDD MTNSFYKEAT FPQVNLPTDM DRSYNQHHET FMLKDQGSSS NYNTILPQNL 300 DYGFDQNHFM DQTFCAVTNR NFPRGFP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189200 | 0.0 | AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127539.1 | 0.0 | PREDICTED: transcription factor TCP1-like | ||||
Swissprot | Q9FYG7 | 1e-145 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | M4EYW8 | 0.0 | M4EYW8_BRARP; Uncharacterized protein | ||||
STRING | Bra034010.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-128 | TCP family protein |
Publications ? help Back to Top | |||
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