PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12528_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 425aa    MW: 47158.9 Da    PI: 7.0187
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12528_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.2e-32225280156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  RrC12528_p1 225 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 280
                  68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682222282IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28223283IPR009057Homeodomain-like
SuperFamilySSF466892.51E-17223283IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-26225280IPR006447Myb domain, plants
PfamPF002493.6E-7227278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASSSELSLD CKPQSYSMLL KSFGENFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC  60
MQLLNNAVEV YKQQLEAYRA NGNNNNQSVV TRPVLEEFIP LRNQPEKANN WMTTAQLWSQ  120
PETKPKNNDS STDTPKDELA SSPKLGHVDA KQRNGGGAFH PFTKEQHLPE LALSTEVKRF  180
SPTIEHTNDH GNDESMINSG NNKNNNNNNS NSNGISSTTS QSNRKARRCW SPDLHRRFVQ  240
ALQMLGGSQV ATPKQIRELM KVDGLTNDEV KSHLQKYRLH TRRPSPSPQT SGGQGPHLVV  300
LGGIWVPPEY TTAHGGTPTL YHHQVHHHHG NAATQPPQHF CSSQEFYTTP PTPQPLHHQH  360
FQTFNGSSGG GATSNDSAHH QLTDSATDEG RSLESASGEG KGLAALREEG EDQSNINGSE  420
ITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14225278154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14225278154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14225278154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14225278154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14225278255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478326.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A397Z3C00.0A0A397Z3C0_BRACM; Uncharacterized protein
STRINGBra025115.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]