PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12440_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 282aa    MW: 32372.7 Da    PI: 6.1895
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12440_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.85.1e-24116165352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  k +s e++s+yF++pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl
  RrC12440_p2 116 KALSKETVSRYFYMPITQAAMELDVGLTLLKRRCRELGFRRWPHRKLMSL 165
                  789********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.29102185IPR003035RWP-RK domain
PfamPF020423.2E-19118165IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAVHKLKEER PFSFLTYSPS FDDHISLAFP SFEWEEELLP LHNNFVSQSF HLPTLTLPLP  60
DLESLSQDVL DTYSSTEQNR GEGDLEKNTK KRKLNIEHSV GIISGITTYT NFPGSKALSK  120
ETVSRYFYMP ITQAAMELDV GLTLLKRRCR ELGFRRWPHR KLMSLLALIN NVKERQKMDG  180
GENTGIFKNA VEILEDERRR IEENPDLEFT DKTKRLRQAC FKATHKMKKK KRSLKSEMSI  240
PSCSSSGSVV SEEESVTEGV ESDDEEVKYL LCGFTSDEFS GW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895741e-105AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446924.11e-172PREDICTED: protein RKD2
SwissprotQ9CA661e-105RKD2_ARATH; Protein RKD2
TrEMBLA0A3P6BTQ61e-162A0A3P6BTQ6_BRACM; Uncharacterized protein
STRINGBra015907.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-85RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]