PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12359_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 430aa    MW: 48811.1 Da    PI: 6.3763
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12359_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.21.1e-20232289155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                  k r+ Wt +L e+F+ea++  GG++kA Pk il++   +++kgLt+++v SHLQk+Rl
  RrC12359_p1 232 KSRMTWTGDLQEKFLEAIKIVGGPKKASPKIILKClqdLNIKGLTRNNVSSHLQKHRL 289
                  68******************************98733358*****************8 PP
2Response_reg57.96e-20361411107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + + ++++++e+  y +v++ +d+eea++ l +++  +++++ D  mpg++Gl++l  i ++  +lp+i++++ ++ e + +a+  Ga 
   RrC12359_p1  36 VLVVDASLSTLLNMKEIMERCAY-QVTAYADAEEAIAFLTNSKheINIVIWDYHMPGINGLQALAIIGSKM-DLPVIIMSDDDQTESVMDAMVHGAC 130
                   899********************.***************776667**********************6654.8************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                    +++Kp+ +e +
   RrC12359_p1 131 HYVMKPVRKE-I 141
                   ******7655.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2732156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-3134182No hitNo description
SMARTSM004484.0E-1734145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.22835150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-1636142IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-1637145No hitNo description
SuperFamilySSF466891.16E-11230292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-19231293IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-16232289IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSIRNITEDG DKTLLLQQEI CEISSPLSEF PPSTNVLVVD ASLSTLLNMK EIMERCAYQV  60
TAYADAEEAI AFLTNSKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVI IMSDDDQTES  120
VMDAMVHGAC HYVMKPVRKE IIATIWQHIV RKRMKSKTGL VPPAVAHDDC SKQEKEEATK  180
KRRRTGIEET QPMQSDLVKS NGSDQDSDDS RSVSNYNCEQ SINNKNARYF KKSRMTWTGD  240
LQEKFLEAIK IVGGPKKASP KIILKCLQDL NIKGLTRNNV SSHLQKHRLS LEQNQIPQQF  300
PETDWSSLCR PSPFLGMNNG FIAPSSFMNG PAVYPVQENQ YQNGYLSMNN NHFVTNNMPG  360
LSYFNNDHHL QQQHQQRQYQ LPNQVNNMMR RNEPQQAYNG IGLTDLESST YPSLPNDLNE  420
FLFDGYNFGN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450308.10.0PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-128ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLA0A3P6BPS20.0A0A3P6BPS2_BRACM; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.14e-68response regulator 19