PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1233_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 263aa    MW: 30685.2 Da    PI: 6.7628
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1233_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1773125456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  RrC1233_p1  73 KKRLQLEQVRALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 125
                 4457889*********************************************9 PP
2HD-ZIP_I/II124.35.7e-4071163193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rl+ eqv++LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++L++++++lk++n++L +++++L +e+++
   RrC1233_p1  71 EKKKRLQLEQVRALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLRKQFESLKSDNDSLLAHNKKLLAEVMS 163
                  69*************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.6E-1670131IPR001356Homeobox domain
SuperFamilySSF466891.97E-1871129IPR009057Homeodomain-like
PROSITE profilePS5007116.03471127IPR001356Homeobox domain
CDDcd000862.92E-1572128No hitNo description
PfamPF000461.0E-1473125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1875135IPR009057Homeodomain-like
PRINTSPR000312.7E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000312.7E-5107123IPR000047Helix-turn-helix motif
PfamPF021831.5E-15128166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDNTHD QFPSCHPPHL FNGGNYMMNR SMSLTNVQED HHPTVDEENL  60
SDDGLHMILG EKKKRLQLEQ VRALEKSFEL GNKLEPERKI QLAKALGMQP RQIAIWFQNR  120
RARWKTRQLE RDYDSLRKQF ESLKSDNDSL LAHNKKLLAE VMSLKNNDCN EASIIKREAE  180
ASWSNNGSTD INLKMPRETT TTHVSTIKDL FPSSIRASTH HHQNHEMVQK ESLCDMFNGT  240
DETTTDGYWP WSDPNHNNHH QFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433028.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like isoform X2
SwissprotQ8LAT01e-162ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A398AUP01e-171A0A398AUP0_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZRK41e-171A0A3P5ZRK4_BRACM; Uncharacterized protein (Fragment)
STRINGBostr.1460s0094.1.p1e-168(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-164homeobox protein 20