PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12211_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 318aa    MW: 36383.9 Da    PI: 7.254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12211_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31e-094692254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 +ykGV +   +g W A+I+       ++r++lg+f +a eAa+a++ a  k++
  RrC12211_p1 46 KYKGVVQQQ-NGHWGAQIYAD-----HRRIWLGTFRSAAEAAAAYDSASIKIR 92
                 8****9888.8******9993.....4********************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-1146105No hitNo description
PROSITE profilePS5103216.77946103IPR001471AP2/ERF domain
PfamPF008472.4E-54692IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1346104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1646103IPR001471AP2/ERF domain
SMARTSM003801.8E-1746109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.5E-10163207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-13170242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10171240No hitNo description
SMARTSM010193.2E-5172263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNTEDAKTEE TSSITNGGFL PFKKRMSHLN NPPNSALEVA LPGKVKYKGV VQQQNGHWGA  60
QIYADHRRIW LGTFRSAAEA AAAYDSASIK IRTYDANTHR NFPWSEYTVH EPAFQNEHTT  120
EAVLNMIKDG TYQRKYNEFS KKIQSKIAKR CNVVGSKEDQ ESSKRFSCTQ LFQKELTASD  180
VGKLNRLVIP KKYAVKYLPF ISEREEGEVV EDVERDEISG RWIAFVKEKS LKEKDVITFY  240
TCDVPTLEGQ SKNFLMVDVH RFSDNETVVT DEEVNKIVHK SFDDVMKPDN FSKSKLGEEE  300
TKPEENKGGF MLFGVRIQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893019e-62AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487669.11e-169PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_018487676.11e-169PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-128RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A397YYG91e-153A0A397YYG9_BRACM; Uncharacterized protein
STRINGBo6g022280.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-114RAV family protein