PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1218_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 340aa    MW: 38517.6 Da    PI: 5.9419
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1218_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.5e-21225318498
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++++  +lk + ++lp + +    +++ + k+++l +++g+sW+v ++++ + g+y++++GW++F+++n+ + gD +vF ++g+ ++++++ v+ 
  RrC1218_p2 225 AEVTDTNLKDDKMYLPVEAMCCTALNQ-QCKEVKLVNKQGNSWSVSFRFSESEGTYYISRGWRKFCRDNRCRNGDLFVFNVVGDGTTTPLLCVCL 318
                 567889999*********984447765.668*****************************************************99999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-17221317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-17222310IPR015300DNA-binding pseudobarrel domain
CDDcd100175.69E-16222320No hitNo description
PROSITE profilePS5086313.789222320IPR003340B3 DNA binding domain
SMARTSM010191.1E-18223320IPR003340B3 DNA binding domain
PfamPF023626.2E-19226318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLLRYNEREL VASQQVLEEL FNEEERIAIY RAHYELEKAK AEARENGAAS VAGTSGRNEE  60
AGPSSPSESG NRECDYLRLY PALPIVSIYL TDPVSPTAIQ RILISPLIVK KLQTRLQMTT  120
PQEPHFFKPL LPGFQTGVTI PLAFFSKHIQ GTHINKPWKL LSDASDESWE VIREGRTLTK  180
GDMVYHVTPF GPSCSEILYN HPHIVNEEAE ADDAPIFSYD YCFLAEVTDT NLKDDKMYLP  240
VEAMCCTALN QQCKEVKLVN KQGNSWSVSF RFSESEGTYY ISRGWRKFCR DNRCRNGDLF  300
VFNVVGDGTT TPLLCVCLKR KECTDQKLSN NFSIASSSRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553463e-86AC155346.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH081N08, complete sequence.
GenBankAP0116223e-86AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558610.11e-128B3 domain-containing protein REM9-like isoform X2
TrEMBLM4DWI01e-126M4DWI0_BRARP; Uncharacterized protein
STRINGBra020874.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-39B3 family protein