PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12155_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 263aa    MW: 30292.6 Da    PI: 9.3267
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12155_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-1156103154
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  RrC12155_p2  56 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMGYDSASIKLR 103
                  69*****999.8*********3.....4********************999987 PP
2B371.98e-23180263176
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                  f+k+lt sdv+k++rlv+pkk+a ++        +g+  e+++++++d++ rsW++k++y+ +s+++v+t+GW  Fvk++ Lke
  RrC12155_p2 180 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEVVEDVEVVFYDREMRSWTFKYCYWTSSQGFVFTRGWIAFVKEKSLKE 263
                  99****************************99986666799*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-2156116No hitNo description
PfamPF008473.8E-656103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1557115IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1457115IPR016177DNA-binding domain
SMARTSM003801.6E-1657120IPR001471AP2/ERF domain
PROSITE profilePS5103216.83257114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.4E-26175263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-22178263IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-19179263No hitNo description
PROSITE profilePS5086311.928180263IPR003340B3 DNA binding domain
SMARTSM010196.0E-5180263IPR003340B3 DNA binding domain
PfamPF023623.7E-20180263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MFLVSSVIPM DIAKPETLNT SDSYLPVKKR MRLNEPPTDK ALVSTAIDKV SFSNNTKYKG  60
VVQHQNGHWG AQIYVDHKRI WLGTFKSAAE AAMGYDSASI KLRSFDANSY RNFPLSDLTV  120
HEPVFQKDYT TEAVLNMIKD GSYPREFKEF LKNRSQVVTG SKQSIRGEES NKCFSCTQLF  180
QKELTASDVG KLNRLVIPKK YAVKYLPFIS EREEGEVVED VEVVFYDREM RSWTFKYCYW  240
TSSQGFVFTR GWIAFVKEKS LKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-201792621393DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486600.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018487331.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-121RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P6FPW31e-173A0A3P6FPW3_BRAOL; Uncharacterized protein
STRINGBra018854.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-114RAV family protein