PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1214_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 140aa    MW: 15419.7 Da    PI: 8.4759
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1214_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.82.4e-5117105189
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                 vreqdr+lPian+srimk++lP n+ki+kdak+tvqecvsefisfvtseasd+cq+ekrkt+ng+dllwa++tlGfedy+epl++yl++
  RrC1214_p2  17 VREQDRYLPIANISRIMKRALPPNGKIGKDAKDTVQECVSEFISFVTSEASDRCQKEKRKTVNGEDLLWAMTTLGFEDYLEPLRLYLAR 105
                 69*************************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-4815105IPR009072Histone-fold
SuperFamilySSF471133.42E-3620105IPR009072Histone-fold
PfamPF008081.8E-272387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-185169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-187088No hitNo description
PRINTSPR006156.3E-1889107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MADTPSSPGG GESGGSVREQ DRYLPIANIS RIMKRALPPN GKIGKDAKDT VQECVSEFIS  60
FVTSEASDRC QKEKRKTVNG EDLLWAMTTL GFEDYLEPLR LYLARGIIRA QERAGIVTIE  120
MQLGVVPVKI CRAGEARSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-4616105291NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4616105291NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532481e-100AK353248.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458420.13e-72PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_018474671.13e-72PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ9SLG01e-67NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A384KRF59e-66A0A384KRF5_ARATH; NF-YB1
TrEMBLB6EUB69e-66B6EUB6_ARATH; Nuclear factor Y, subunit B1
TrEMBLE4MXK18e-66E4MXK1_EUTHA; mRNA, clone: RTFL01-27-P17
TrEMBLV4P0188e-66V4P018_EUTSA; Uncharacterized protein
STRINGXP_006411113.11e-66(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.36e-61nuclear factor Y, subunit B1