PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12135_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21486.9 Da PI: 4.1389 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 4 | 54 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps+ r r++lg+f taeeAa +++a+ +++g+ RrC12135_p3 4 KYRGVRRRP-WGKFAAEIRDPST---RSRVWLGTFVTAEEAAMVYDRAAIRFRGH 54 8********.**********976...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.733 | 4 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-12 | 4 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-31 | 4 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-28 | 4 | 59 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 4 | 60 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-34 | 4 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 27 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
PAVKYRGVRR RPWGKFAAEI RDPSTRSRVW LGTFVTAEEA AMVYDRAAIR FRGHNAQTNI 60 LAPPPPPPPV IDLETVSRCD SASQSLRSPT SVLRFNANEE TEVEIEPIEL SSPASLFPNP 120 YSLPDLCLAG ECFWDSETPP EPLFLDEIEI HKPVLNPVVP KEENEPEDFS FDLSEDFDAS 180 PWDVDNFFEN G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 5 | 59 | 3 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189358 | 1e-131 | AC189358.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB044E18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490477.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor CRF6-like | ||||
Swissprot | Q9M374 | 9e-75 | CRF6_ARATH; Ethylene-responsive transcription factor CRF6 | ||||
TrEMBL | A0A0D3DUW2 | 1e-110 | A0A0D3DUW2_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g096140.1 | 1e-111 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61630.1 | 2e-54 | cytokinin response factor 6 |