PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1210_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 234aa    MW: 26823.3 Da    PI: 4.9007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1210_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-115899854
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 Er+RR+++N+++  Lr+++Pk +      Kl+Ka++ +  ++Y+++L
  RrC1210_p5 58 SERNRRQKLNQRIMALRSVVPKiS------KLDKASVIKDSIDYMQEL 99
                6*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4025099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1555118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-95799No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1557116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-95899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEDLDIEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSL ASSKNLVSER  60
NRRQKLNQRI MALRSVVPKI SKLDKASVIK DSIDYMQELI DQEKKLAAEI RELESQSLLI  120
ENPTRDYDCI NNFPENQQQN LSDVNVLRSK KSRQMDYNTS GSSITRVHNH SLIEVLEMKV  180
TWMGEKTVVV CIACSKKRET LLQLCKVLES LDLNIITTNF SSFSSRLSTT LFLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450304.11e-172PREDICTED: transcription factor bHLH27-like
SwissprotQ700E31e-133BH027_ARATH; Transcription factor bHLH27
TrEMBLV4MCR61e-148V4MCR6_EUTSA; Uncharacterized protein
STRINGXP_006412786.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-112bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]