PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11944_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 514aa    MW: 58787.8 Da    PI: 9.1226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11944_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.2e-16271061798
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   lp++f +++g+ ++e  ++tl +e g+ W+  liy k+ g ++l++GW++F+++n+  ++  ++Fkl++  ++++v+++++
  RrC11944_p2  27 FLPRDFSRSNGLTNRE-CEITLLNEYGKPWTALLIYYKTTGDVYLRRGWRNFCHENQKGANGLLTFKLVQ-AGTKPVLQLCS 106
                  69********998655.6**************************************************98.78889999997 PP
2B3551.5e-17126212189
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  f++ +++++++k++ l+lp +f++++g+ ++  ++++l d++g + +  l+ +++ gr+ l+kGWkeF++ ng+k+gD + ++l++++e
  RrC11944_p2 126 FLTLTLTHYNFKRCKLCLPATFLKANGITSA--RKIILVDRHGIKRTTSLKPDNNFGRMRLGKGWKEFCEVNGVKAGDAIKLELIKEEE 212
                  6778899*******************98855..58********999999988********************************98744 PP
3B344.13.6e-142232961187
                  HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  lk +   +p  f+++h  g  +e +  ++l++  s ++Wevk+  ++++    lt+GW++F++ ++L++gD+v+F++dg+
  RrC11944_p2 223 LKFCTKNIPMAFFSKHinGTTNEDNAVVKLTSdASDKTWEVKI--NGRR----LTQGWQNFANFHDLRSGDIVIFRRDGD 296
                  5557778**********8666667778888876888*******..8888....***********************6653 PP
4B350.92.9e-16347438394
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                   + ++s++l++++l l + f +++g+  ++  +++l +e+g+ W++ l+  k  gr+++++GW +F+++n+ +++D ++Fkl+++ s++e +v
  RrC11944_p2 347 VARVTSSNLSRDMLLLTRGFSRSNGLMDRK-CEIILLNEDGKPWTLFLTNHKPYGRVYISTGWIRFCHQNRKRANDLLTFKLVQTvSTGEICV 438
                  56789*******************777655.59***************88888899***************************9988886654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.2E-1721108IPR003340B3 DNA binding domain
PfamPF023622.0E-1527106IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1527110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.33528107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1328107IPR015300DNA-binding pseudobarrel domain
CDDcd100177.72E-1528106No hitNo description
Gene3DG3DSA:2.40.330.104.7E-19118211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18122210IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323126229IPR003340B3 DNA binding domain
PfamPF023621.2E-15126212IPR003340B3 DNA binding domain
SMARTSM010194.4E-17126216IPR003340B3 DNA binding domain
CDDcd100171.06E-13126201No hitNo description
CDDcd100175.46E-11218304No hitNo description
SMARTSM010192.9E-10222307IPR003340B3 DNA binding domain
SuperFamilySSF1019364.45E-15224313IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-9227296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-18228316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.406230307IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-16339430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16341430IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-17345438No hitNo description
SMARTSM010193.2E-15345445IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139345444IPR003340B3 DNA binding domain
PfamPF023621.3E-14347438IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-5447484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-6447484IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.287448513IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSREETGLQN AGPNPPRHRS FAARPAFLPR DFSRSNGLTN RECEITLLNE YGKPWTALLI  60
YYKTTGDVYL RRGWRNFCHE NQKGANGLLT FKLVQAGTKP VLQLCSSMHN RDCIRGSSSS  120
KSQGRFLTLT LTHYNFKRCK LCLPATFLKA NGITSARKII LVDRHGIKRT TSLKPDNNFG  180
RMRLGKGWKE FCEVNGVKAG DAIKLELIKE EEEEEDRSAT YLLKFCTKNI PMAFFSKHIN  240
GTTNEDNAVV KLTSDASDKT WEVKINGRRL TQGWQNFANF HDLRSGDIVI FRRDGDLLFH  300
VTSFGPSCCQ ILYNDDVIQI SSDSDSEKCH QDHTREAGSP SDNSCFVARV TSSNLSRDML  360
LLTRGFSRSN GLMDRKCEII LLNEDGKPWT LFLTNHKPYG RVYISTGWIR FCHQNRKRAN  420
DLLTFKLVQT VSTGEICVVE WYGESKEDRH GFKRTTSLRP DNNNGKMRMG KGWREFCEAN  480
GVKAEFHWRC SKLELIEEEE EDTAIHLLKF CSKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640184.11e-132B3 domain-containing protein REM10-like
TrEMBLA0A397ZEZ01e-127A0A397ZEZ0_BRACM; Uncharacterized protein
STRINGBra034869.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-51B3 family protein