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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC11934_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 383aa MW: 42829.1 Da PI: 10.2115 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC11934_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00054 | 32 | 50 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
+C+k F+r nL+ H r H
RrC11934_p1 32 ICNKGFKRDQNLQLHRRGH 50
7****************88 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
TSYTKNPSPR ILALTLILPP QTQTKGKEIS RICNKGFKRD QNLQLHRRGH NLPWKLKQRT 60
DKEQVKKKVY VCPEKTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVMSDW 120
KAHSKICGTR EYRCDCGTLF SRAFCDALAE ESARFASVPP AAVACLNNAS DAEVNLGNIK 180
PNHQQRLPDR TSSQHDQHGF NINHDNINGF TRQSSTNQLP LAANVFASSS SSSLSPSPHS 240
ASALLQNLWQ LQGRQSYQWL LNENNNNIIH SGMPNNQEDY DTKKGISLGS NLFSSEARTN 300
YNQNGGQEMG SMSATALLQR ATQMGSKRSS SSSNSGMAFG LMTSSIFNNK EMENNIKTKE 360
VDERGFTRDF LGVASQNRPR PIL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352822 | 1e-129 | AK352822.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-P14. |
