PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11918_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 421aa    MW: 47791.9 Da    PI: 6.9159
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11918_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-102833201954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+++e+  LAk++gL+++qV +WF N R +
  RrC11918_p1 283 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 320
                  664459******************************88 PP
2BELL115.62.4e-37146217172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+kk+kLl++++eVd +Y+qy++q+++++ssFe+vaglg+akpYt++Al++iSrhFrcL+da++eq+
  RrC11918_p1 146 ERQELQSKKNKLLTMVNEVDLKYNQYHHQMEALASSFEMVAGLGAAKPYTTVALNRISRHFRCLRDALKEQV 217
                  79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-4491215IPR006563POX domain
PfamPF075263.2E-4197213IPR006563POX domain
PROSITE profilePS5007112.536261324IPR001356Homeobox domain
CDDcd000861.89E-11264325No hitNo description
SMARTSM003895.4E-10264328IPR001356Homeobox domain
SuperFamilySSF466897.7E-18265332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28267330IPR009057Homeodomain-like
PfamPF059204.9E-18281320IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVFIPPTSDE AVVTGLNGSS GGGLSLSLGN HQIQYHYQNL SNQLSYPSLS NENEKSLHHH  60
HQQQPEHVPS SGYINGVGSG LYNNHRYETT GGFVSSVLRS PYLKPTQQLL DEVVSVRKLG  120
GDSNKKIKNN TNVSSENNNE ELSSSERQEL QSKKNKLLTM VNEVDLKYNQ YHHQMEALAS  180
SFEMVAGLGA AKPYTTVALN RISRHFRCLR DALKEQVGVM RGKLGEEESK EEEGERIPRL  240
RYLDQRLRQQ RALHQQLGMV RPSWRPQRGL PENSVSVLRA WLFEHFLHPY PKESEKIMLA  300
KQTGLSKNQV ANWFINARVR LWKPMIEEMY KEEFGDSSEL LSNSNQDSNI KMQETSQLKH  360
EDSSSSQQQS HGNNNVTDTS DADRGDYDSL MNYHQGFGAD DYNRYIGGLG DQQDGRFSNP  420
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-16270328563Homeobox protein Meis2
4xrm_B8e-16270328563Homeobox protein Meis2
4xrs_A7e-16270327158Homeobox protein Meis1
4xrs_B7e-16270327158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446674.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_018446675.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_018446676.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9FWS90.0BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLV4KK100.0V4KK10_EUTSA; Uncharacterized protein
STRINGXP_006390306.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38201959
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-158BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]