PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11810_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 24832.9 Da PI: 10.2678 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 156 | 204 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+ E++++ +vk+ + Wk ++ ++ +R++k+++s+++++ RrC11810_p1 156 KSWTAKEEQKFRSLVKKNPLSnrdgFWKYASKAFP-RRSEKDVISYYYNV 204 58****************98899************.************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.4E-7 | 154 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-4 | 154 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-6 | 156 | 204 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-7 | 156 | 204 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.226 | 157 | 205 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.70E-6 | 157 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MRLGGSDCYI SISCQSKRTL EQPRSSGTVS TAPPERSLGN TSDSSFDKKR QKVVPSSHPR 60 SSSRQTVAAA ASNRPNRKDV GVKIPGSNKT KPVIPVGPGF QAEIPVWIAP TKKGKFYGST 120 DCVKLHIKEA RELLEKETGG AFYTWKFDEM GEVGSKSWTA KEEQKFRSLV KKNPLSNRDG 180 FWKYASKAFP RRSEKDVISY YYNVFLNHRN TDDDHYGDFL AG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018476289.1 | 1e-132 | PREDICTED: uncharacterized protein LOC108847527 | ||||
Refseq | XP_018476290.1 | 1e-132 | PREDICTED: uncharacterized protein LOC108847527 | ||||
TrEMBL | A0A3P6AJ00 | 1e-104 | A0A3P6AJ00_BRAOL; DNA topoisomerase 2 | ||||
TrEMBL | M4CNK6 | 1e-104 | M4CNK6_BRARP; DNA topoisomerase 2 | ||||
STRING | Bra005794.1-P | 1e-105 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11639 | 4 | 5 |