PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11789_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 35905.3 Da PI: 7.4833 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.4 | 3.7e-36 | 26 | 139 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaessss 80 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak ai++l+++ s RrC11789_p1 26 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSAIDDLAELppwnpadtirqaaankpkrS-------------- 109 79**************************************************************65554444433332221110.............. PP TCP 81 sasnsssg............................k 89 + + RrC11789_p1 110 -------KtlipppatteihggsgeetehhpsvflpA 139 .......122223333333333333333444444542 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-32 | 26 | 95 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.07 | 28 | 86 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
RHQSALEHGG CGEIVEVEGG HIVRSTGKKD RHSKVCTAKG PRDRRVRLSA PTAIQFYDVQ 60 DRLGFDRPSK AVDWLIKKAK SAIDDLAELP PWNPADTIRQ AAANKPKRSK TLIPPPATTE 120 IHGGSGEETE HHPSVFLPAA SIYHQPPSRA DTQSQDLRLS LHSFQKAPPF AGETEHALFS 180 GQSNPLGFDS STASWDQSQQ NHRLVTWNNG GAADSAASGG GGFVFASPAT TTSYQPQSQF 240 FSQRGPLQSI NTPMLRAWFD PYHHHQSVTT NDHHHHHHHY HPYQSAIPGI AFASSGELSG 300 LRVPAARYQS EQDDHGDKPS SDSSDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-20 | 33 | 86 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-20 | 33 | 86 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392814.1 | 1e-159 | transcription factor TCP3 | ||||
Refseq | XP_006392815.1 | 1e-159 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-138 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | V4JXC2 | 1e-158 | V4JXC2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392814.1 | 1e-159 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-111 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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