PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11784_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 242aa    MW: 27311.5 Da    PI: 4.8449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11784_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183887255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +gr++AeIr p +   + r++lg+f+taeeAa a+++a+++++g
  RrC11784_p1 38 KYVGVRRRP-WGRYAAEIRNPAT---KERHWLGTFDTAEEAALAYDRAARSIRG 87
                 79*******.**********843...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-283895IPR001471AP2/ERF domain
PROSITE profilePS5103221.0873895IPR001471AP2/ERF domain
SMARTSM003809.0E-3238101IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-213896IPR016177DNA-binding domain
PfamPF008471.5E-123887IPR001471AP2/ERF domain
CDDcd000181.58E-303894No hitNo description
PRINTSPR003671.4E-83950IPR001471AP2/ERF domain
PRINTSPR003671.4E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDFNGNGNAV SSSRSKKSHR QKQQQPQPQP QQHNEEIKYV GVRRRPWGRY AAEIRNPATK  60
ERHWLGTFDT AEEAALAYDR AARSIRGLTA KTNFVYSDMP RGSSVTSFIS PDESQRFISE  120
LFNPPSQLEA PHNSNNNNLY LSTNNQNQNS IEFSYNGWTH EPECGYQSMN TNDEHCNHEL  180
PPLPPSTCSG AELTIPETDS YWNLQAHADM DTFSFELDGF VDQNTLGESG TEGFDSSSST  240
FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1835941171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676719.11e-155ethylene-responsive transcription factor ERF087-like
RefseqXP_013692225.11e-155ethylene-responsive transcription factor ERF087-like
RefseqXP_018459366.11e-155PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-132ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A3N6SY371e-153A0A3N6SY37_BRACR; Uncharacterized protein
TrEMBLA0A3P6DY601e-153A0A3P6DY60_BRAOL; Uncharacterized protein
STRINGBo7g048420.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-108ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]