PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11732_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 444aa MW: 49550.9 Da PI: 6.6771

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11732_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	414.8	7.8e-127	42	444	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................. 81 l++lL+++A+++s+++ ++aq+lL+ ls+++sp+gd+++Rl++ ft+AL+ r+ ++ ++++t+e++ss+++++ RrC11732_p1 42 LRRLLFTAADFISQSNVSAAQNLLSILSTNSSPYGDSTERLVHLFTKALSVRIGL-----SENTATWTTNEMTSSTVFTSSvckeqflfrtknnnnsd 134 689************************************************87.....44444555555443333333335666778889999888 PP GRAS 82 .....kl.fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesgskeeleetge 163 l +++++P+++fshltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+ +ppslRiTg+g+ + + l++tg+ RrC11732_p1 135 lescyYLwLNQLTPFIRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpsssTPPPSLRITGCGR----DVTVLNQTGD 228 88765226********************9888799*********************76655555599*****....****** PP GRAS 164 rLakfAeelgvpfefnvl..vakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 rL++fA++lg++f+f++l v+++l+ l +l +L+ +gE++aVn+v+ lhr+++e++ ++L+++ksl+P++v+++e+e++h+++sFl+ RrC11732_p1 229 RLTRFANSLGLQFQFHTLvtVEEDLAGLlpqiRLLALSAVQGETIAVNCVHFLHRFFNEDHGDML--GHFLSAIKSLNPRIVTMAERETNHGDPSFLT 324 *************965444555555622444555566************87766555..8************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklllr ++ s+gy+++ RrC11732_p1 325 RFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEAAERKQRHRRFEVWEEMMKRHGFVNVPIGSFALSQAKLLLRLHYpSEGYNLQ 422 ********************************************************************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 ++sl+lgWk+r L+svS+W+ RrC11732_p1 423 FLNDSLFLGWKNRLLFSVSSWK 444 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.959	16	423	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-124	42	444	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MLASFKSSSS SSEDATTENN PPPPPPLCLA SSSAATSAAH HLRRLLFTAA DFISQSNVSA 60 AQNLLSILST NSSPYGDSTE RLVHLFTKAL SVRIGLSENT ATWTTNEMTS STVFTSSVCK 120 EQFLFRTKNN NNSDLESCYY LWLNQLTPFI RFSHLTANQA ILDATETNNG NGALHILDLD 180 ISQGLQWPPL MQALAERSSS NPSSSTPPPS LRITGCGRDV TVLNQTGDRL TRFANSLGLQ 240 FQFHTLVTVE EDLAGLLPQI RLLALSAVQG ETIAVNCVHF LHRFFNEDHG DMLGHFLSAI 300 KSLNPRIVTM AERETNHGDP SFLTRFSEAV DHYMAIFDSL EATLPPNSRE RLTLEQRWFG 360 KEILDVVAAE AAERKQRHRR FEVWEEMMKR HGFVNVPIGS FALSQAKLLL RLHYPSEGYN 420 LQFLNDSLFL GWKNRLLFSV SSWK

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MLASFKSSSS SSEDATTENN PPPPPPLCLA SSSAATSAAH HLRRLLFTAA DFISQSNVSA  60
AQNLLSILST NSSPYGDSTE RLVHLFTKAL SVRIGLSENT ATWTTNEMTS STVFTSSVCK  120
EQFLFRTKNN NNSDLESCYY LWLNQLTPFI RFSHLTANQA ILDATETNNG NGALHILDLD  180
ISQGLQWPPL MQALAERSSS NPSSSTPPPS LRITGCGRDV TVLNQTGDRL TRFANSLGLQ  240
FQFHTLVTVE EDLAGLLPQI RLLALSAVQG ETIAVNCVHF LHRFFNEDHG DMLGHFLSAI  300
KSLNPRIVTM AERETNHGDP SFLTRFSEAV DHYMAIFDSL EATLPPNSRE RLTLEQRWFG  360
KEILDVVAAE AAERKQRHRR FEVWEEMMKR HGFVNVPIGS FALSQAKLLL RLHYPSEGYN  420
LQFLNDSLFL GWKNRLLFSV SSWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-60	50	443	27	378	Protein SCARECROW
5b3h_A	5e-60	50	443	26	377	Protein SCARECROW
5b3h_D	5e-60	50	443	26	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ324235	0.0	HQ324235.1 Brassica rapa cultivar 1151 transcription factor LAS (LAS) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483336.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	0.0	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	F2X2E4	0.0	F2X2E4_BRAOL; Transcription factor LAS
STRING	Bo6g034670.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	0.0	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]