PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11642_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 338aa    MW: 37493 Da    PI: 6.6494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11642_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08253293954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  RrC11642_p1 253 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 293
                  69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-13249308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-11250298No hitNo description
SMARTSM003535.9E-13250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGTNRTME HHQGSDLIWG GNELMPRELC SSSHQLINPN LRSCFMSDLG  60
VINEIQHQQH VGNRAASIDP SSLECLLSAT TNTSTEDDEG ISALFSDCQT LWSFGGGGVS  120
SAESENKEIT TETATTKPKS LKRNRDETGS HFRLVHHPQD ETEKGSFKLI YDENQPKPKK  180
PRTEKGGGSS NISFGHSASL SDNAEPDAEA IAQMKEMIYR AAAFRPVNFG LETVEKPKRK  240
NVKISTDPQT VAARQRRERI SEKIRVLQTL VPGGTKMDTA SMLDEAANYL KFLRAQVKAL  300
ENLRPKLDPT NLSFSSPLFH PSFIPMQNPN QIHHPPEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183PKKPRTE
2253258RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489296.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A397ZC010.0A0A397ZC01_BRACM; Uncharacterized protein
STRINGBo5g101160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]