PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11565_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 456aa    MW: 50338.4 Da    PI: 5.8005
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11565_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30265321359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK vk +++prsYYrC+++gC+vkk+ver+a+d k++++ Y+g+H h+
  RrC11565_p1 265 DGYRWRKYGQKIVKANPNPRSYYRCSYSGCNVKKHVERAADDVKILVVSYNGRHVHP 321
                  9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-30249323IPR003657WRKY domain
SuperFamilySSF1182905.89E-25258323IPR003657WRKY domain
PROSITE profilePS5081130.664258323IPR003657WRKY domain
SMARTSM007743.5E-32263322IPR003657WRKY domain
PfamPF031062.4E-23265321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSDYSDGNFM DMVSHWTPLP SPILGEIVAM PDQTDNGLNP ISNTFLPTNQ SEKKPSLVER  60
VSARVGRNIP PLRIENLRPS ALFKNKKTVL GVDEISPGLS PSVMLQSPSQ LISPFSFPND  120
WPPETVENPG DDHAATMIFN NNVPYQPMHF DLPPQEGSYM MVPVTGNSAY IPSHESQVDP  180
IGAPLVASFE SELADDPDFS KLLSFPLDDE SESQEDDDIA GELEIKPSSP KRRKYEASDM  240
ITAGITSKDP SVIIRMETEE DQPCDGYRWR KYGQKIVKAN PNPRSYYRCS YSGCNVKKHV  300
ERAADDVKIL VVSYNGRHVH PEPGPRSSSS SGPKNRPRSS VPARLGRPPF SSSSAARDKR  360
PLAYPSALAT QNMRPFAYPS ASATQDMRPF PSSLNSGVDV THLYKTGLSK MPSLPVNQTH  420
GLMGQNAEPW VNQNHGLMGQ NAEPWVNQNH GLWPEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22252323374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479053.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A0D3CR230.0A0A0D3CR23_BRAOL; Uncharacterized protein
STRINGBo6g034690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2037656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.11e-76WRKY DNA-binding protein 10