PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11488_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 254aa MW: 28330.3 Da PI: 8.3566 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 164.4 | 1.7e-50 | 52 | 254 | 15 | 242 |
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++erdn+l+al+++en l+ l + + +s RrC11488_p1 52 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERDNALTALQHRENHLNYIL-----ACAKRGGYQS-- 140 4557777..99*************************************************************999755433.....2222222221.. PP GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPv 210 ++ + e++ + p+++ ++e++ ++k+kk +++++++ +k k+ +e+ +++ ++++ ++ ++++++ d++ln v++De+t+Pv RrC11488_p1 141 ----------CF-TDETHLPNPSPLSTIPHESSPTTKRKKDRKQETAR---SKGKRAGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFDETTMPV 222 ..........12.23445555666677666666555555333333332...2333334567888999999..579*********************** PP GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242 P+C+CtG+ rqCYkWG GGWqS+CCttt+S+y RrC11488_p1 223 PMCTCTGTARQCYKWGHGGWQSSCCTTTLSQY 254 ******************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.0E-60 | 33 | 254 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.7E-48 | 50 | 254 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
GAIFFLLLLG LSLETISRDL SRLPLLLSPA KPELSSNCWC SGNMMPQHQI KEQHNALVMN 60 KKIMSILAER DAAVKERNEA LAAKQEALAA RDEALQQRDL AISERDNAIM ERDNALTALQ 120 HRENHLNYIL ACAKRGGYQS CFTDETHLPN PSPLSTIPHE SSPTTKRKKD RKQETARSKG 180 KRAGGEDLNR QLASPGKKCR KDWDCNDVGL NLVTFDETTM PVPMCTCTGT ARQCYKWGHG 240 GWQSSCCTTT LSQY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480223.1 | 1e-155 | PREDICTED: protein BASIC PENTACYSTEINE5-like | ||||
Swissprot | F4JUI3 | 1e-108 | BPC5_ARATH; Protein BASIC PENTACYSTEINE5 | ||||
TrEMBL | A0A0D3DIF6 | 1e-145 | A0A0D3DIF6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6F1T2 | 1e-145 | A0A3P6F1T2_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g119540.1 | 1e-145 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4090 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38910.2 | 3e-99 | basic pentacysteine 5 |