PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11458_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 301aa MW: 34557.9 Da PI: 4.8446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11458_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2.1e-08	176	220	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P a +Kl+ ae+ e A +Y+k Lq RrC11458_p1 176 SIAARERRRRIADKTHELTKLIPGA-----QKLNTAEMFEAAAKYVKFLQ 220 567899****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.16E-10	163	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.417	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-10	173	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-7	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-6	176	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.47E-4	192	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MDCLSHFFDW DQPIQLQDCF IPDVDTTNPE TDSFFFQSQP QLQYHQPLFQ EEAPSQTLLE 60 LTDLDYLCDQ FLSPQETCLP YPKTEIFNQT HDLDSFLPTP KLQKLVSSSY QCHTHNHFSS 120 PNPNFFNYYD QLDLAPETSI FPNFQVPDFP LEFKVGRGDE DRSSHGTKKP SLSSQSIAAR 180 ERRRRIADKT HELTKLIPGA QKLNTAEMFE AAAKYVKFLQ SQVGILQMMQ NTTKTHISDA 240 EIKTRVLLGS KAIQEKLSRD ELCLVPCGMV RDLASEESIW RNPMISGEIN KFLSADMSNN 300 F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466572.1	0.0	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-132	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A078IRR0	1e-163	A0A078IRR0_BRANA; BnaCnng22590D protein
STRING	Bo4g039270.1	1e-162	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-123	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]