PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1144_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 27776.1 Da PI: 7.8523 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.9 | 2.1e-32 | 6 | 78 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ k++lvg++ktLvfy+grap+g+ktdWvmhe+rl RrC1144_p1 6 GKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR-KSKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 78 689************************************9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.05 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-38 | 3 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-15 | 8 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
TACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RAILRKSKLV GMRKTLVFYQ 60 GRAPRGRKTD WVMHEFRLQG SFDPPTLNSP EVQEDWVLCR VFHKNTEGVL SRDNVGSCFD 120 ETASASLPPL MDSYINFDQE PSSYLGDDQH FITNEQVPCF SNLSKNQTLT NSVSELKKNP 180 IPLFTGGSAP TRLPGLDSFC SSDQMVLRAL LSQLTKIDGG IDVKESQSYG EGSSESFLTD 240 IGIPSTAWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-32 | 2 | 106 | 66 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 2 | 106 | 69 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-32 | 2 | 106 | 66 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-32 | 2 | 106 | 66 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966749 | 0.0 | KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018450146.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-155 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3P6BS46 | 1e-167 | A0A3P6BS46_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g185760.1 | 1e-167 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.1 | 1e-148 | NAC domain containing protein 1 |