PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11342_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 111aa MW: 13002.9 Da PI: 4.5789 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 26.9 | 1.5e-08 | 75 | 108 | 10 | 43 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdk 43 + hTkv+g++ R ++ a caa +F+L++e G+ RrC11342_p1 75 DCHTKVEGKGCRFCMAAMCAACVFELTREPGYGH 108 89***************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00197 | 0 | 88 | 96 | IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MSLEPENMGM REWLKENVKE EEYVVMKAEV DVLEVMMMRR NMETDRYLGT VREDETFRIL 60 LEREPLSGFS NFPQDCHTKV EGKGCRFCMA AMCAACVFEL TREPGYGHYS N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |