PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11299_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 222aa    MW: 23093.4 Da    PI: 7.7108
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11299_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.91.4e-352583361
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 ++ l+cprC+s  tkfCyynny+l qPryfCk+CrryWt+GG+lr+vPvGgg+r++ ++
  RrC11299_p1 25 SEPLPCPRCNSVITKFCYYNNYNLLQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 83
                 57899*************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-232677IPR003851Zinc finger, Dof-type
PfamPF027011.5E-312782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.9412882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MPPESKPARV QGSTSTAAYP PPNMSEPLPC PRCNSVITKF CYYNNYNLLQ PRYFCKSCRR  60
YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS NATTASSSSC SSSIITTANG SEPMNQGTVT  120
NEAKGGNEIS GYGSFASLLS GQSDGAGFLA LGNGSGSGGL DYGFGYGYGL EEMSIGYLGG  180
GSGGEIPVVG GSDTWQIGEM EGKSGDSLWP GLEISMQSNG AK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00189DAPTransfer from AT1G47655Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0889464e-66AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590549.11e-123PREDICTED: dof zinc finger protein DOF1.6
SwissprotQ9SX973e-72DOF16_ARATH; Dof zinc finger protein DOF1.6
TrEMBLA0A0D3CNY41e-122A0A0D3CNY4_BRAOL; Uncharacterized protein
STRINGBo6g010470.11e-122(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.12e-50Dof family protein