PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11280_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 347aa    MW: 39491.1 Da    PI: 7.4916
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11280_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-39842282128
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg........ 88 
                  a+kkdrhskihT++g+RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ +ai el++ +   +++    +++ ++++++    +        
  RrC11280_p1  84 AVKKDRHSKIHTAQGLRDRRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRAIEELVQEKKLYNNDEdfgNNGGNVEKDD----Dvgdksfvy 177
                  89**************************************************************444443332222222222222....022345667 PP

          TCP  89 ............kaaksaa.kskksqksaasalnlakesrakarararertre 128
                                 k ++ +++++++++++ ++  k srakar +a+e+ re
  RrC11280_p1 178 gscsdcfeeevvC--KVKKpEKRNKKTESSNISSSTKRSRAKARGKAKEKARE 228
                  7788888877532..3333244455555555778888999****999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3785228IPR005333Transcription factor, TCP
PROSITE profilePS5136934.45886144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSSNNSYNN GSNNAVFPYL SLYLSSLSGH QGIIPYNHQS SASPGHMVSA VPESLINYMP  60
FSSNSAMNQQ GLDIPEVSRE IKKAVKKDRH SKIHTAQGLR DRRVRLSIGI SRQFFDLQDM  120
LGFDKASKTL DWLLKKSRRA IEELVQEKKL YNNDEDFGNN GGNVEKDDDV GDKSFVYGSC  180
SDCFEEEVVC KVKKPEKRNK KTESSNISSS TKRSRAKARG KAKEKAREII SDHPETASKI  240
IQNEIMDPFK RSINFNEGED MTDSFYKESI QESANQECIT KIKVNLPMNM DQSYNQQYRE  300
LMLKDQGYTS NYYAILPQNL DSDYNPNPFI DQLYCGDTST NFFRGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1491144154Putative transcription factor PCF6
5zkt_B5e-1491144154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444521.10.0PREDICTED: transcription factor TCP1-like isoform X1
RefseqXP_018444522.10.0PREDICTED: transcription factor TCP1-like isoform X1
SwissprotQ9FYG71e-137TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A397YTL10.0A0A397YTL1_BRACM; Uncharacterized protein
STRINGBra004097.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-114TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]