PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1117_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 32442.6 Da PI: 6.5154 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 13 | 57 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ e+d + +a + + + W++Ia+ ++ g++ +q+k+++ RrC1117_p2 13 AWSREDDIAFERALASHTDEsdaKWEKIAADVP-GKSVEQIKEHYE 57 7*****************99*************.**********95 PP | |||||||
2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky RrC1117_p2 125 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 169 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.974 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-8 | 13 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-8 | 13 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-5 | 13 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-9 | 14 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.173 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-16 | 120 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-17 | 122 | 172 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-10 | 122 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.51E-10 | 125 | 170 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 125 | 168 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-11 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAVEEVSDGG SAAWSREDDI AFERALASHT DESDAKWEKI AADVPGKSVE QIKEHYELLV 60 EDVGRIESGC VPLPDYGGSP EGSNGHGGGG DDDGGSGKRG GNSHAGESNQ GSKAKSEQER 120 RKGIAWTEDE HRLFLLGLDK YGKGDWRSIS RNFVVTRTPT QVASHAQKYF IRLNSMNKDR 180 RRSSIHDITS VGDADVSTPQ GPITGQNNTS SNNNNNNNTG SAAVAGGGNK PAKQAASQPP 240 PPGPPPMYGT TPSIGQPVTG PLVSAVGTPV NLPAPSHLAF GVHAAQVPGA PVNMGQMPYT 300 LPRTPTAHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 14 | 76 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399351.1 | 1e-180 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-166 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | E4MWT4 | 1e-179 | E4MWT4_EUTHA; mRNA, clone: RTFL01-15-N01 | ||||
TrEMBL | V4LAV4 | 1e-179 | V4LAV4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399351.1 | 1e-180 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-141 | MYB family protein |
Publications ? help Back to Top | |||
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