PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11177_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 300aa    MW: 33885.8 Da    PI: 4.8272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11177_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-18107157256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+++AeIrd s+   r+r++lg+f taeeAa a+++a+ +l+g+
  RrC11177_p1 107 KYRGVRRRR-WGSFAAEIRDSST---RTRIWLGTFATAEEAAVAYDRAAIRLKGH 157
                  8*****777.**********543...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-34107170IPR001471AP2/ERF domain
CDDcd000183.23E-28107163No hitNo description
PfamPF008476.9E-12107157IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-19107164IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-28107163IPR001471AP2/ERF domain
PROSITE profilePS5103221.074107164IPR001471AP2/ERF domain
PRINTSPR003671.7E-9108119IPR001471AP2/ERF domain
PRINTSPR003671.7E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MERRTRRVKF TEHCTVKPVP AKPSNGSPRV VRIAYTDPFA TDSSSDDEND NNNNNLTVAS  60
PTPRVKRYVE EIRFGETKPK AARKARCKAE KGGRVEKKAD VTTNPVKYRG VRRRRWGSFA  120
AEIRDSSTRT RIWLGTFATA EEAAVAYDRA AIRLKGHNAL TNFLTPPPSP EETPPVIDLK  180
TVSGWNQSLC SPTSVLRFNV KDETEYPTEL KTEPIDLAAE VKPDVASLFP DPYSLPELSL  240
AGEYFWDSEF PPEPLFLDEI EITEPVANRK EDNEPEDFSF HLCGDFDASP WDVDDFFEPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17108163662ATERF1
3gcc_A1e-17108163662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446193.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-95CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A078ILP51e-159A0A078ILP5_BRANA; BnaC06g42850D protein
STRINGBra003462.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-76cytokinin response factor 6