PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11149_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 283aa    MW: 32339.8 Da    PI: 9.6679
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11149_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind73.83.1e-2387428103
                   EEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  28 fvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   + +l +  fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++i+r+k++
   RrC11149_p1   8 MTLLSSFGFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIHRRKTS 74 
                   566677789*******************************99.........**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-22571IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-22771IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-181071IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-191371IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-102032IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-103345IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLFLGEMMTL LSSFGFARDL LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEFFKRG  60
EKHLLCEIHR RKTSQMLPNQ HSPFMTHHPP PPQIPFSAAG ASFFSLPPPV DAADDQYWCE  120
SPPPRARVVI PTTVDAQVTA LTEDNERLRR SNTVLMSELA HMKKLYNDII YFVQNHVKPV  180
APSNTYLSSF LQKQQQPPPP PPIDYYTVPN LNALHSPPTS QSSITVLEDD TNHESNTRKT  240
KLFGVSLPSS KKRSHHFSDQ STKTRLLLDK SDLGLNLMTA STR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250254KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934999e-71AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486637.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-145HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A078FXM01e-156A0A078FXM0_BRANA; BnaC06g00310D protein
TrEMBLA0A3P6H1V61e-156A0A3P6H1V6_BRAOL; Uncharacterized protein
STRINGBo6g008100.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-136heat shock transcription factor B4