PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11138_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 338aa    MW: 38991 Da    PI: 7.4231
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11138_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.8e-114694155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ykGV     +g W A+I+       ++r++lg+f +a eAa+a++ a  kl+g
  RrC11138_p1 46 TKYKGVVKQQ-NGHWGAQIYAE-----HRRIWLGTFNSAAEAAAAYDSASIKLRG 94
                 69****8666.8*********5.....5************************998 PP
2B392.14.1e-29171263184
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                  f k+ltpsdv+k++rlv+pkk+a +h         +g+   +++++++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+ 
  RrC11138_p1 171 FHKELTPSDVGKLNRLVIPKKYAVKHlpfisddqeEGEAVDDVEVVFYDSTMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDVIVFYS 263
                  89*****************************98887777799*************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-64694IPR001471AP2/ERF domain
CDDcd000181.90E-1246106No hitNo description
SuperFamilySSF541713.14E-1447106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-1747104IPR001471AP2/ERF domain
SMARTSM003805.6E-1847110IPR001471AP2/ERF domain
PROSITE profilePS5103217.85947104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-31165263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-27169264IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-24170262No hitNo description
PfamPF023627.2E-26171263IPR003340B3 DNA binding domain
SMARTSM010199.2E-20171279IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421171276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVILHEISNE AKTTTETSGS SNSVLEHMKP TISTTTRTAL SNTAKTKYKG VVKQQNGHWG  60
AQIYAEHRRI WLGTFNSAAE AAAAYDSASI KLRGFDANSH RNFPWSEITV HEPDFQILYT  120
TEAVLNMIRD GSYLHKFRDH VMSRSRMANF NTMGFKQSQE SNKCFSCTQL FHKELTPSDV  180
GKLNRLVIPK KYAVKHLPFI SDDQEEGEAV DDVEVVFYDS TMRQWKFRYC YWRSSQSFVF  240
TRGWNGFVKE KNLKEKDVIV FYSCDVPSHV KRLEGQNNSF LMIDVDHKGF VAPKEENKMV  300
HSEEMKTEDL FNSKLEDEET KPEEEKKGGF MLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2617026113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448838.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-178RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078IB770.0A0A078IB77_BRANA; BnaA08g02030D protein
STRINGBo3g179890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-159RAV family protein