PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC11134_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 213aa MW: 24107.9 Da PI: 8.3114 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 1e-10 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g + R++k+c++rw +yl RrC11134_p2 14 KGAWTKEEDQRLIDYIRRHGEG----------LLRCGKSCRLRWINYL 51 79******************99..........689***********97 PP | |||||||
2 | Myb_DNA-binding | 27.3 | 8.4e-09 | 79 | 102 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w+++ RrC11134_p2 79 RWSLIAGRLP-GRTDNEIKNYWNTH 102 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-16 | 5 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.816 | 9 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-7 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-9 | 14 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-20 | 14 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-9 | 16 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 55 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-4 | 56 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-6 | 79 | 102 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR RHGEGLLRCG KSCRLRWINY LRPDLKRGNF 60 SDEEDQSPSV YEILIFFFRW SLIAGRLPGR TDNEIKNYWN THIKRKLLSH GIDPQTHRPV 120 KDNVAVTDAK TASSQLSTTV IVSPQNYAVE YGASTSSTTT DEDLRQNGDS YYRDNSGDME 180 LNLDLTLGSG SGSTSWVGSK PWRDTAMAAR LSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-22 | 14 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467922.1 | 1e-133 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | Q38851 | 5e-99 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A3P6A982 | 1e-105 | A0A3P6A982_BRACM; Uncharacterized protein | ||||
STRING | Bo3g044210.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-96 | myb domain protein 6 |