PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11078_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 303aa    MW: 35057.9 Da    PI: 6.7005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11078_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.9e-18114166456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  RrC11078_p1 114 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQSRQIAIWFQNRRARWK 166
                  4568889*********************************************9 PP
2HD-ZIP_I/II124.93.7e-40112203192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglq rq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++e+ 
  RrC11078_p1 112 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQSRQIAIWFQNRRARWKTKQLERDYDSLKKQFDILKSDNDSLLAHNKKLHAEVV 203
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-19100170IPR009057Homeodomain-like
SMARTSM003896.0E-16111172IPR001356Homeobox domain
PROSITE profilePS5007116.455112168IPR001356Homeobox domain
CDDcd000863.24E-15113169No hitNo description
PfamPF000464.3E-15114166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-18116176IPR009057Homeodomain-like
PRINTSPR000311.1E-5139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5148164IPR000047Helix-turn-helix motif
PfamPF021833.3E-15168207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYMYEEERNN IVNNQEELRL EMAFPQHGFM FQQLHEENAH HLPSPTSLPS CPPHLFYGGG  60
NYVMNRSMSF TGVSDHHHIT QKSPTPTNMN DQDQVGDEDN LSDDGSHMML GEKKKRLNLE  120
QVRALEKSFE LGNKLEPERK MQLAKALGLQ SRQIAIWFQN RRARWKTKQL ERDYDSLKKQ  180
FDILKSDNDS LLAHNKKLHA EVVALKKQDR KESGKIKRES AEASWSNNES TENNNNSSEG  240
LKDLFPSSIR SVTTSTTSAH IDHQMVQDQG FCNMFNSIDE TTSAGYWAWP DQQQPHHNHH  300
HFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475041.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-180HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A397ZYL10.0A0A397ZYL1_BRACM; Uncharacterized protein
STRINGBo3g010120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-146homeobox 3