PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1100_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 913aa MW: 101290 Da PI: 4.8733 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.6 | 2.2e-27 | 619 | 669 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ RrC1100_p6 619 EKIIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 669 68899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.665 | 608 | 689 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-23 | 623 | 669 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.21E-24 | 805 | 899 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.8E-24 | 812 | 895 | No hit | No description |
SMART | SM00666 | 1.8E-26 | 814 | 897 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.383 | 814 | 897 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.17E-43 | 815 | 896 | No hit | No description |
Pfam | PF00564 | 1.4E-16 | 815 | 896 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDGKSLKQT 60 EEAEAASTAM NDNSPFLCFG ENPSQDDETE RMNQEPFNQV ATGSDQAEKF LLDEAEVGRS 120 WWIAPRTSED PSSSVKERLL RAISGLEEAV PDKDFLVQIW VPFQQEGKNF LTTLAQPHLF 180 NQKYSSLAKY RHVSETYNFP ADEGSTEGGL PGRVFLQKFP EWTPDVRFFR SDEYPRIKEA 240 QKCDVRGSLA LPVFERCSGT CLGVVEVVTT TQKMNYRPEL ENICKALEAV DLRSSSNLKP 300 SSNEVYDDFY YAALPEISDF LASVCRTYDM PLALSWAPCT RQGKGGSRHS YENFSQCVST 360 IDSACFVLDE ESKYFLEACF EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKSNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV 480 IDKDLELEVV LPVREDMVLS ENPLTGAETA EALKEIHLLQ ESSWISHMIK ANEKGKDVSL 540 SWEYQNEDPK DEFKLSSGWD NSQLDPVPNN VPSEAEQFQH GSTSGLRVDA GPSTESASTG 600 GGNKLGSRRP GEKRRTKTEK IIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR 660 WPSRKIKKVG HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEHL 720 HHLNVPNENG GLAEDKPAQM SPSSSCSGSN TNTPNTLHVT QDANGVLKKA HSEAELQNGN 780 QEETKCLART QSHNVFKEPP LPGRSNMSLR DGGGIKVKAT FGEAIIRFTL LPSWRYRELQ 840 QEIARRFNID QVSWFDLKYL DDDEEWVLLT CEADLEECID IYRTSQSQTI KISLHDPFQV 900 KLGGSFGSSG PSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440658.1 | 0.0 | PREDICTED: protein NLP1 isoform X2 | ||||
Swissprot | Q8H111 | 0.0 | NLP1_ARATH; Protein NLP1 | ||||
TrEMBL | A0A3N6PMV6 | 0.0 | A0A3N6PMV6_BRACR; Uncharacterized protein | ||||
STRING | Bra002025.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17150.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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