PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1100_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 913aa    MW: 101290 Da    PI: 4.8733
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1100_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.62.2e-27619669252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ek i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++
  RrC1100_p6 619 EKIIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 669
                 68899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.665608689IPR003035RWP-RK domain
PfamPF020421.1E-23623669IPR003035RWP-RK domain
SuperFamilySSF542774.21E-24805899No hitNo description
Gene3DG3DSA:3.10.20.2402.8E-24812895No hitNo description
SMARTSM006661.8E-26814897IPR000270PB1 domain
PROSITE profilePS5174526.383814897IPR000270PB1 domain
CDDcd064071.17E-43815896No hitNo description
PfamPF005641.4E-16815896IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDGKSLKQT  60
EEAEAASTAM NDNSPFLCFG ENPSQDDETE RMNQEPFNQV ATGSDQAEKF LLDEAEVGRS  120
WWIAPRTSED PSSSVKERLL RAISGLEEAV PDKDFLVQIW VPFQQEGKNF LTTLAQPHLF  180
NQKYSSLAKY RHVSETYNFP ADEGSTEGGL PGRVFLQKFP EWTPDVRFFR SDEYPRIKEA  240
QKCDVRGSLA LPVFERCSGT CLGVVEVVTT TQKMNYRPEL ENICKALEAV DLRSSSNLKP  300
SSNEVYDDFY YAALPEISDF LASVCRTYDM PLALSWAPCT RQGKGGSRHS YENFSQCVST  360
IDSACFVLDE ESKYFLEACF EHHLLQGEGI VGKAFKATKL CFVPEVTTFS KTNYPLAHHA  420
KISGLHAALA VPLKSKSNGL VEFVLEFFFP KGCLDTEAKQ EMLKSLSATL QQDFRSSNLV  480
IDKDLELEVV LPVREDMVLS ENPLTGAETA EALKEIHLLQ ESSWISHMIK ANEKGKDVSL  540
SWEYQNEDPK DEFKLSSGWD NSQLDPVPNN VPSEAEQFQH GSTSGLRVDA GPSTESASTG  600
GGNKLGSRRP GEKRRTKTEK IIGLDVLRQY FAGSLKDAAK SIGVCPTTLK RICRHHGITR  660
WPSRKIKKVG HSLKKLQLVM DSVQGAQGSI PLDSFYTSFP ELSSPNISSN GSSLKNNEHL  720
HHLNVPNENG GLAEDKPAQM SPSSSCSGSN TNTPNTLHVT QDANGVLKKA HSEAELQNGN  780
QEETKCLART QSHNVFKEPP LPGRSNMSLR DGGGIKVKAT FGEAIIRFTL LPSWRYRELQ  840
QEIARRFNID QVSWFDLKYL DDDEEWVLLT CEADLEECID IYRTSQSQTI KISLHDPFQV  900
KLGGSFGSSG PSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440658.10.0PREDICTED: protein NLP1 isoform X2
SwissprotQ8H1110.0NLP1_ARATH; Protein NLP1
TrEMBLA0A3N6PMV60.0A0A3N6PMV6_BRACR; Uncharacterized protein
STRINGBra002025.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Suzuki W,Konishi M,Yanagisawa S
    The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor.
    Plant Signal Behav, 2014.
    [PMID:24270631]