PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10932_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 378aa    MW: 43246.2 Da    PI: 9.0047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10932_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.3e-066284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  RrC10932_p1 62 YVCEICNQGFQRDQNLQMHRRRH 84
                 9*********************9 PP
2zf-C2H214.30.00012141163123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k +  +s++k H++t+
  RrC10932_p1 141 WVCQRCSKGYAVQSDYKAHLKTC 163
                  58*******************98 PP
3zf-C2H212.70.00038171189523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr +n+  H+ t+
  RrC10932_p1 171 DCGRVFSRVENFIEHQDTC 189
                  9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-55985No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976284IPR007087Zinc finger, C2H2
PfamPF128740.0186280No hitNo description
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355290105135IPR015880Zinc finger, C2H2-like
SMARTSM00355100141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIDYEKNNNH QNFPSSSSPD LLLAVNGAAV INKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKREKKDEEV KKRVYVCPEP TCLHHHPCHA  120
LGDLVGIKKH FRRKHSVLKQ WVCQRCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE  180
NFIEHQDTCT IRGPQPTNHR PLHQNKESHA TPSRTFFTPS INPLLHGVPF LRPPQTSHQQ  240
SLAFASSAPF ENLQLQLSIG MTKTQVKRNE KSETSLTMER AIEEARRAEE MRQEARRQRE  300
MAEVDFEKAK NIRKEAKAEL DKAQVVREEA IKRVNATMLE ITCHSCKDMF QLPVLADEST  360
SSLVTCYVSS ATTEGECE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16139205571Zinc finger protein JACKDAW
5b3h_F3e-16139205571Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450340.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLA0A078HGY80.0A0A078HGY8_BRANA; BnaA08g19250D protein
TrEMBLA0A3P6BUW80.0A0A3P6BUW8_BRACM; Uncharacterized protein
TrEMBLM4D3C70.0M4D3C7_BRARP; Uncharacterized protein
STRINGBra010981.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.11e-165indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]