PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10917_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 549aa MW: 59634.9 Da PI: 8.602 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.6e-30 | 217 | 276 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+ RrC10917_p2 217 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 276 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 203 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-27 | 210 | 278 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.851 | 212 | 278 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-37 | 217 | 277 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 218 | 276 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MEVLKKLTTS DTKDEFAGSA SCPGEGRIQE NRKVSRELES ANIEMSEMKE ENEKLKVMLE 60 HIESDYKSLR LRFMNKQQNS SAKPVRDDKN DQINAEFLGS SDQESEFVSL FLGIRGSNSP 120 SNSIANKEEK TKLISLGVEK DKELTNVDLT LGPNVGLAKE KSVISSLENT SSEEAPIMNK 180 VTRKRSSPSG DADDNGQQNL AKRARVCVRA RCDTLTMNDG CQWRKYGQKV AKGNPCPRAY 240 YRCTVAPGCP VRRQVQRCVD DMSILITTYE GTHNHPLPLS ATAMASTTAA AASMLLSGSS 300 TSGLDTEMIK NGMNFKLYDN SSRFINNPTA LSPLHPTVTL DLTAPPMPKP SSSPYSLNFN 360 KFPSLQRFPS TSLNFSASSS SSDSTSTINI PTIWGSGYAS FSPVTDSKVQ VGSPSFLNIG 420 KTLPQNPSLT ETLTKALTSD PSFHSVIAKA ISNMVGSGNG DQQSSWSGRN LMQNSSTSNS 480 LSIINQEAAD SNNKNKGCEG YFSSLLMSNM ANPGMLSPLN LPSSQLPFTM FTTSSSSTPS 540 FLNKEKKRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 204 | 278 | 1 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437679.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 1e-163 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | A0A078GUB2 | 0.0 | A0A078GUB2_BRANA; BnaCnng05780D protein | ||||
STRING | Bra040505.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-134 | WRKY DNA-binding protein 72 |