PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10606_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 26449.8 Da PI: 9.2841 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.1 | 4.2e-34 | 85 | 142 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ RrC10606_p1 85 EDGYRWRKYGQKAVKNSSYPRSYYRCTTQKCNVKKRVERSFQDPSMVITTYEGKHNHP 142 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-35 | 69 | 144 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-30 | 76 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.099 | 79 | 144 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-40 | 84 | 143 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 85 | 142 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGQIVNYPYL NLNPNSPIVS SSSIEADPKE SLGDKSGSME DNEGDQHGVG ESSKQLTKQG 60 KEKGEKKERE ARVAFMTKSE IDHLEDGYRW RKYGQKAVKN SSYPRSYYRC TTQKCNVKKR 120 VERSFQDPSM VITTYEGKHN HPIPSTLRGP VVSEHLLGHR GSCLFHSFPR QHQEFLVMNQ 180 PPVNYQSVGS KSYECTHRSN SNHQEIKSQP FVVVHVEKQT LLNVLTIRLL LC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-29 | 74 | 145 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-29 | 74 | 145 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00168 | DAP | Transfer from AT1G29860 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430077 | 1e-170 | KF430077.1 Brassica rapa WRKY transcription factor 71 (WRKY71) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463617.1 | 1e-139 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q93WV4 | 2e-96 | WRK71_ARATH; WRKY transcription factor 71 | ||||
TrEMBL | A0A078GIK7 | 1e-109 | A0A078GIK7_BRANA; BnaA09g26610D protein | ||||
TrEMBL | A0A397Y5L2 | 1e-109 | A0A397Y5L2_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5Y2B5 | 1e-109 | A0A3P5Y2B5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EU58 | 1e-109 | M4EU58_BRARP; Uncharacterized protein | ||||
STRING | Bra032340.1-P | 1e-109 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13911 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 7e-93 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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