PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1059_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 1117aa    MW: 121820 Da    PI: 8.0872
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1059_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.89.8e-08321339119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C+k+CH GpC+pC+
  RrC1059_p3 321 CGRHQCEKTCHVGPCDPCQ 339
                 ******************6 PP
2zf-NF-X118.16e-06385402118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C++ CH+GpC+ C
  RrC1059_p3 385 CGNHFCSEVCHPGPCGDC 402
                 ****************99 PP
3zf-NF-X122.91.9e-07444461118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG H+C++ CH G+C pC
  RrC1059_p3 444 CGLHTCNEVCHSGDCSPC 461
                 ****************** PP
4zf-NF-X118.64.1e-06541559119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++lCH G CppC 
  RrC1059_p3 541 CGQHSCESLCHSGHCPPCL 559
                 ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.3E-6142212No hitNo description
PROSITE profilePS500168.965150211IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590153208IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.553153209IPR001841Zinc finger, RING-type
CDDcd060088.65E-6242304No hitNo description
SMARTSM004380.023266284IPR000967Zinc finger, NF-X1-type
PfamPF014228.4268283IPR000967Zinc finger, NF-X1-type
CDDcd060083.06E-12311359No hitNo description
PfamPF014229.2E-6321338IPR000967Zinc finger, NF-X1-type
SMARTSM004386.4E-5321340IPR000967Zinc finger, NF-X1-type
CDDcd060087.39E-9375420No hitNo description
PfamPF014227.2E-5385402IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-5385404IPR000967Zinc finger, NF-X1-type
CDDcd060088.25E-14434481No hitNo description
PfamPF014221.9E-6444461IPR000967Zinc finger, NF-X1-type
SMARTSM004383.0E-5444463IPR000967Zinc finger, NF-X1-type
PfamPF0142218502513IPR000967Zinc finger, NF-X1-type
CDDcd060082.29E-9531583No hitNo description
PfamPF014221.0E-4541558IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4541560IPR000967Zinc finger, NF-X1-type
CDDcd060081.70E-6588635No hitNo description
PfamPF0142223598615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.079598616IPR000967Zinc finger, NF-X1-type
PfamPF014220.017651666IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017651681IPR000967Zinc finger, NF-X1-type
CDDcd060081.47E-4679730No hitNo description
SMARTSM004380.014690711IPR000967Zinc finger, NF-X1-type
PfamPF014220.43691709IPR000967Zinc finger, NF-X1-type
PfamPF014241.4E-4823887IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MSSQVRRDRR QQNSQQTWVP RGASTSVGVV NEPSHPPVNT AGVSESLATG AAASRPVYPQ  60
RQHNDSTRHP HNQQHQRSNF TGPPPPNRQR RNNNNAPGTA LPVDNRQRVG SRTRPVYQGK  120
RVAKEENSGL TDPNLPQLVQ ELQEKLVKSS IECMICYDKV GRSANIWSCS SCYSIFHMHC  180
IKKWARAPTS IDLLAEKNQG DNWRCPGCQS VQLTSSREIC YRCFCGKRKD PPSDPYLTPH  240
SCGEPCGKPL EKEFAAAAET AKEDICPHVC VLQCHPGPCP PCKAFAPPRS CPCGKKTVHT  300
RCSERRSLLV CGQRCEKLLN CGRHQCEKTC HVGPCDPCQV LVNATCFCKK KAETVICGDM  360
NVKGELKAED GVYSCNLNCG KLLGCGNHFC SEVCHPGPCG DCDLLPSRVK TCYCGKTRLE  420
EQTRQSCLDP VPSCSNICEK LLPCGLHTCN EVCHSGDCSP CLVQVNQKCR CGSTSRTVEC  480
YITTSEIEKF VCSKPCGRKK NCGRHRCSER CCPHLNTKKN DLSGDWDPHV CQLPCGKNLR  540
CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GNTSIPPPLP CGTPVPSCQL PCSIPQPCGH  600
SATHGCHFGD CPPCSAPVEK KCVGGHVVLR NIPCGLKDIR CNKICGKTRR CGMHACARTC  660
HPEACDTYNE SEAGVRVTCG QTCSAPRRDC RHTCAALCHP SQPCPDSRCE FPVTITCSCG  720
RITAAVPCGA GGGSTSNLSV DSVYEASVLQ KLPTSLQPVE SNGNRIPLGQ RKLSCDDECA  780
KLERKRLLQD AFDITPPNLD SLHFSDNSAM TEIISDIYRR DPKWVLAVEE RFKFLVLGKA  840
RGSASTLKVH VFCPMQKDKR DTVRLLAERW KLAVSNAGWE PKRFTVVHVT QKSKPPTRII  900
GPRGGAVSLG GPHAPSFDPL VDMDPRLVVS LLDLPREANI SALVLRFGGE CELVWLNDKN  960
ALAVFHDHAR AATAMRRLDH GSVYQGAVVV QNSAQSPSLG NAWGKLPSSS SWEAQKANPW  1020
KKAVIQESDE NWGAEDSPIG GSSTDIQASA WRSATSNTPV VTSVNRWSVL EQEKPNTSAL  1080
QPLVQTEGSS SSSKAAGKQP VEGSSEEVVD DWEKVCE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435283.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
RefseqXP_018435290.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM4DTW50.0M4DTW5_BRARP; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1