PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10590_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 361aa    MW: 41505.8 Da    PI: 6.3488
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10590_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.14e-23163220155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                  k+r+ Wt +L ++F+ea++  GG+++AtPk +l++   mk++gLt+++v SHLQkYRl
  RrC10590_p1 163 KQRMLWTADLQQKFLEAINIVGGPKNATPKLLLKClqdMKIEGLTRNNVSSHLQKYRL 220
                  79****************************9876544499*****************8 PP
2Response_reg28.29.8e-1115353106
                   CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
  Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                   mpg++Gl++l  i ++  +lp++++++ ++ e++ +a+  Ga  +++Kp+ +e 
   RrC10590_p1   1 MPGINGLQALAIIGSKM-DLPVVIMSDDDQTELVMDAMVHGACHYVMKPIRKEI 53 
                   9************6654.8******************************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.81E-7157No hitNo description
Gene3DG3DSA:3.40.50.23003.7E-15169No hitNo description
PfamPF000721.1E-6155IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.07E-12169IPR011006CheY-like superfamily
PROSITE profilePS5011020.861162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466897.7E-13161223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-21162224IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-19163220IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPGINGLQAL AIIGSKMDLP VVIMSDDDQT ELVMDAMVHG ACHYVMKPIR KEIIATMWQH  60
IVRKRMISKP GLVPPIVAHY YCSKQEKDDY VSVDQDDCEQ NIDKIEEEAT NKRRRTCIGE  120
THPMQSDLVK SNDSDQDSND FRSVSSYNGE QSIDKEKERY FKKQRMLWTA DLQQKFLEAI  180
NIVGGPKNAT PKLLLKCLQD MKIEGLTRNN VSSHLQKYRL SLEQNKIPQQ LPETDWSSLC  240
RPSSFLGMNN GFIAPSSLIN GPAVYSVQEN QYQNGYLAMN NNHFVTNNMP GFPYLNNDHH  300
LQQQHQQRQY QLPNQVNYMM RRNENQQAYN GISLTDLESS IYPSLPNDPN EFLFNGYNFS  360
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450308.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A3P6F8J40.0A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.17e-51response regulator 19