PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1054_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 38583 Da PI: 6.2205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.9 | 2.1e-49 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhP+deelv++yL++k++++ + + e+d++ +ePw+Lp +k + kewyfFs rd+kyatg r+nrat sgyW RrC1054_p5 10 LPPGFRFHPSDEELVCHYLCHKIRARYdhgdvE---DdgagealngatDLVEIDLHVCEPWELPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYW 105 79**********************999655440...15666667776469**************87788999*************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 katgkd++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle RrC1054_p5 106 KATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152 ***********967888***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-51 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.836 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-26 | 11 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGLKDIGSKL PPGFRFHPSD EELVCHYLCH KIRARYDHGD VEDDGAGEAL NGATDLVEID 60 LHVCEPWELP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS 120 QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE SSCMYELCMT WGCMMRWQVF 180 NKGRDLSLQD NDNEHQTQRF EVNDASDLNY NNHSQPLLLS PPSTTIDPPH HHDQWEQLMK 240 QPSRSADHPY HHNCQHQTVA CGWEQMMIGS MSSSSSHGPD HESLLNLLYA DNNNSVNIPD 300 DNYGQNYGKI LLSSDIANLD HYKTCMASSS DGGTYGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-42 | 10 | 151 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738273 | 0.0 | KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468831.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
TrEMBL | A0A0D3A3R6 | 0.0 | A0A0D3A3R6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G329 | 0.0 | A0A3P6G329_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g017380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-166 | NAC domain containing protein 74 |