PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10533_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 441aa    MW: 50307.5 Da    PI: 9.7015
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10533_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14895197
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk l     + s+ l++p  f+ ++  g  ++e+ t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L+ gD+++F+ ++++ f  +v+++
  RrC10533_p1  8 FFKPL--LPGFHSH-LTIPVAFFLKYieG--TNEHHTAKLRSdASKITWEVKV--EDG-Q--KLTDGWKEFALAHELRIGDILIFRQERDMAF--HVTLL 95
                 66666..5667777.***********743..3466699999868889******..333.2..4***********************7777888..77765 PP
2B375.56.2e-24200284793
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  +  +l+ + l+lp kf +e+g++++++ +++l++ +gr+W++kl+ +++ g++++t+GW++F++angL++g +++Fkl++r +++l 
  RrC10533_p1 200 SRATLRYDTLSLPVKFSRENGLDTRCE-EIVLMNDKGRTWKLKLKRKRSCGTMYITRGWRSFCSANGLRAGSSFTFKLIKR-GGTLA 284
                  566778899**************8775.****************98999999**************************995.44444 PP
3B350.14.9e-163494371099
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l++  l lp +f++ hg++  +++++tl d++g +W+  l+  + + +++ l +GW+ F kan +k+g++++ kl+++ ++++v+k+++k
  RrC10533_p1 349 NLEKYSLFLPLRFTRWHGID--GETKMTLLDKNGVKWSTVLRSgKTNNDKIRLVGGWQAFFKANCVKTGESIIVKLIWEGDKTCVLKFCSK 437
                  5667779**********988..6779***************8866666669****************************9999*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.196598IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-186105IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-14695No hitNo description
Gene3DG3DSA:2.40.330.101.7E-217111IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-21898IPR003340B3 DNA binding domain
PfamPF023624.8E-101692IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21187280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-20193291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.567194291IPR003340B3 DNA binding domain
SMARTSM010192.9E-30195291IPR003340B3 DNA binding domain
PfamPF023628.5E-22200286IPR003340B3 DNA binding domain
CDDcd100171.46E-21203287No hitNo description
Gene3DG3DSA:2.40.330.101.6E-16332437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-18335436IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-18340438IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633340437IPR003340B3 DNA binding domain
PfamPF023622.3E-14342437IPR003340B3 DNA binding domain
CDDcd100175.00E-13352435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRMAHKRFFK PLLPGFHSHL TIPVAFFLKY IEGTNEHHTA KLRSDASKIT WEVKVEDGQK  60
LTDGWKEFAL AHELRIGDIL IFRQERDMAF HVTLLGSSAC EIQYESCSEE ENNLGNIPNK  120
KNSEREAESS SLGPSCFSAN IWPSSLRYDT LNLPKSFVRA NGLETSCGGE IVLMNEKEKI  180
QRKKAESSSL DPSCFVANIS RATLRYDTLS LPVKFSRENG LDTRCEEIVL MNDKGRTWKL  240
KLKRKRSCGT MYITRGWRSF CSANGLRAGS SFTFKLIKRG GTLALRLTPK EREDCSSEAN  300
ELESLSTEPE SDEESSQDVE KIKKHRSTWK ASSSQSQNRF VTLTLRRFNL EKYSLFLPLR  360
FTRWHGIDGE TKMTLLDKNG VKWSTVLRSG KTNNDKIRLV GGWQAFFKAN CVKTGESIIV  420
KLIWEGDKTC VLKFCSKIKH E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484682.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A0D3C1U60.0A0A0D3C1U6_BRAOL; Uncharacterized protein
STRINGBo4g154840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein