PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10501_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22619.2 Da PI: 9.4184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 58 | 107 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp+ k +r++lg+f taeeAa a+++a+ +++g+ RrC10501_p3 58 YRGVRQRP-WGKYAAEIRDPN---KGARVWLGTFNTAEEAALAYDKAAFEFRGH 107 9*******.**********93...25*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 57 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.815 | 57 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-23 | 57 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-39 | 57 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-34 | 57 | 116 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 58 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-14 | 58 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAQKREEKED LCRCSTLSES DVSAFVSELT DKPIPPSMAS SSSSLTPQEQ RVSRQGNYRG 60 VRQRPWGKYA AEIRDPNKGA RVWLGTFNTA EEAALAYDKA AFEFRGHKAK LNFPEHIVIN 120 STTHHRYLST ATSHDPIIVT PVPTVAPDIL LDQYGKFLPA NSDSNRDNLS ITTSSSLSQQ 180 GNRPRLEESD NLKNMSINKR RK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 57 | 117 | 5 | 66 | ATERF1 |
3gcc_A | 4e-27 | 57 | 117 | 5 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189292 | 1e-146 | AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485116.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF112-like isoform X1 | ||||
Swissprot | P93007 | 4e-79 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A3P6C801 | 1e-110 | A0A3P6C801_BRACM; Uncharacterized protein | ||||
STRING | Bo4g182140.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 5e-65 | ERF family protein |