PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1046_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 343aa    MW: 38781.2 Da    PI: 6.4066
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1046_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.83.9e-48181432128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGf+F+Ptd el+++yLk+k++g + ++ e+i+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e+
  RrC1046_p7  18 FPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPELDIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKIGYWKATGKERNVKS-GSEV 114
                 69************************999.89***************778888899**************************************.9*** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf+ grapkg +t+W+mhey +
  RrC1046_p7 115 IGTKRTLVFHIGRAPKGGRTEWIMHEYCM 143
                 ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-536158IPR003441NAC domain
PROSITE profilePS5100551.03217159IPR003441NAC domain
PfamPF023652.0E-2419142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAVSRDTTV SVAVSTVFPG FKFSPTDIEL ISYYLKRKMD GLERSVEIIP ELDIYNFEPW  60
DLPDKSIVKS DSEWFFFCAR GKKYPHGSQN RRATKIGYWK ATGKERNVKS GSEVIGTKRT  120
LVFHIGRAPK GGRTEWIMHE YCMIGVSLNA LVICRLRRNT EFQGATSQKP PPQPHPHPQP  180
QPSLSLDKNT NLQNQTVSGW ENIVDYYLSG ESGHELLSEI AESSQSSHNP QVPIEEDFYA  240
DILRDDIVKL DDPADSGNTL IDVPRLQSES TTTRVLPLPS MVDKQMQSLL QRLPLQNDIG  300
EENNISMSGC FIGIYSIKSI NRARWDVITW VLVMIAVLVF YLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-411915922168NAC domain-containing protein 19
3swm_B5e-411915922168NAC domain-containing protein 19
3swm_C5e-411915922168NAC domain-containing protein 19
3swm_D5e-411915922168NAC domain-containing protein 19
3swp_A5e-411915922168NAC domain-containing protein 19
3swp_B5e-411915922168NAC domain-containing protein 19
3swp_C5e-411915922168NAC domain-containing protein 19
3swp_D5e-411915922168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747630.0KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485518.10.0PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL90.0NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A078G4K10.0A0A078G4K1_BRANA; BnaC01g23890D protein
TrEMBLA0A0D3A8I00.0A0A0D3A8I0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY00.0A0A3P6FDY0_BRAOL; Uncharacterized protein
STRINGBo1g063720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.10.0NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]