PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1038_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 481aa    MW: 52903.6 Da    PI: 7.6772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1038_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33222278259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers+ d++v+ei+Y+g+H h+
  RrC1038_p2 222 DDGYNWRKYGQKQVKGSDFPRSYYKCTHTACPVKKKVERSQ-DGQVTEIIYKGQHSHQ 278
                 8****************************************.***************8 PP
2WRKY105.82.2e-33380438159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  RrC1038_p2 380 LDDGFRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAANDPKAVVTTYEGKHNHD 438
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29212280IPR003657WRKY domain
PROSITE profilePS5081123.594216280IPR003657WRKY domain
SuperFamilySSF1182901.26E-25219280IPR003657WRKY domain
SMARTSM007747.4E-36221279IPR003657WRKY domain
PfamPF031061.2E-25222278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36365440IPR003657WRKY domain
SuperFamilySSF1182901.27E-29372440IPR003657WRKY domain
PROSITE profilePS5081137.757375440IPR003657WRKY domain
SMARTSM007744.4E-39380439IPR003657WRKY domain
PfamPF031063.9E-26381438IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAEKEEQQKQ PLTLNSSTGA SSRPTISLPP RPFGEMFFSG GLGFSPGPMT LVSNFLSDPD  60
ELKTFSQLLA GAMASPADAA VATAAAVVAT AHQTQVSSVG DVDPRFKQNR PAGLMITQPP  120
AMFTVPPGLS PATLLDSPSF FGLFSPIQGS FGMTHQQALA QVTAQAVHGN SVQSQSEHPS  180
STEQEQQTSL TETPSFQDTL EVSVYEHRSS SSQPQTADKP ADDGYNWRKY GQKQVKGSDF  240
PRSYYKCTHT ACPVKKKVER SQDGQVTEII YKGQHSHQPP QNKTKRDGNG SSRSSDVATL  300
FQTSNSGLNK NKRDQETSQV TTTTEQICEA SDSEEVETSV EPDPKRRNME VRVTEPVTST  360
QRTVTEPRII VQTTSEVDLL DDGFRWRKYG QKVVKGNPYP RSYYKCTTPG CGVRKHVERA  420
ANDPKAVVTT YEGKHNHDVP AARNSSHQLR PNSNLHNTSM DNMNNQEQRV ARLRLKEEQI  480
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-45222441878Probable WRKY transcription factor 4
2lex_A7e-45222441878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465660.0KC246566.1 Brassica napus WRKY transcription factor 3.2 (WRKY3.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477461.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A078I6Y00.0A0A078I6Y0_BRANA; BnaA06g33730D protein
STRINGBra024780.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]