PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1037_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 338aa    MW: 37887.7 Da    PI: 8.4696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1037_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.68.8e-11201245347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++ + + lG+g+W+ I+r +  ++++ q+ s+ qky
       RrC1037_p3 201 PWTEKEHRMFLTGLENLGKGDWRGISRNFVVTKSPTQVASHAQKY 245
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142231.6E-10172No hitNo description
PROSITE profilePS5129417.049193250IPR017930Myb domain
SuperFamilySSF466893.29E-15196249IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17197249IPR006447Myb domain, plants
SMARTSM007179.8E-8198248IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-8199244IPR009057Homeodomain-like
CDDcd001676.86E-7201246No hitNo description
PfamPF002499.1E-9201245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGEDESVDEF AWRVMNLANR LRFYGRNIPD DDVIFRILMK LPARYHETVS YIRTLKDVTI  60
TEVVEMLRGD EWRQRLMDEE TSGSEKWCEF CRKKSHDTSE CYSKNKKVIH DPTTHLPKTI  120
GGSKSSPSQP RSYISYEGYT TGSSPPPGPH SPPPLSIFAA TMKKSFSMDC LPACSSPSSS  180
LAGYVSDGLT QKTPDRKKGI PWTEKEHRMF LTGLENLGKG DWRGISRNFV VTKSPTQVAS  240
HAQKYFIRQA TTLHHKRRRT SLFDMASNVE ENSSIPCNDD DQIGSTTKVV WKQGLTDPCI  300
GHPDPEISGS GNTGGLDLDL RLASHQSSKS NIRPISVT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473565.11e-127PREDICTED: uncharacterized protein LOC108844766
TrEMBLA0A078JJB11e-111A0A078JJB1_BRANA; BnaCnng47140D protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.19e-81MYB_related family protein