PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1033_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 252aa    MW: 28545.2 Da    PI: 4.9587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1033_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2071120255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa a+++a++k++g
  RrC1033_p4  71 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFQTAEEAALAYDRAALKFKG 120
                 8********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.74E-3570129No hitNo description
Gene3DG3DSA:3.30.730.106.0E-3370129IPR001471AP2/ERF domain
PROSITE profilePS5103224.77771128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2371129IPR016177DNA-binding domain
SMARTSM003807.2E-3871134IPR001471AP2/ERF domain
PfamPF008478.5E-1471120IPR001471AP2/ERF domain
PRINTSPR003677.1E-127283IPR001471AP2/ERF domain
PRINTSPR003677.1E-1294110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYGKGPVPPE TSAEEYPSWN ESDFTAMMSS FSHVIEYPAA DGHEMSDQPV KQELDKSDQL  60
QQDQDQPRRK HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FQTAEEAALA YDRAALKFKG  120
TKAKLNFPER VQGPSTTSYV ASQPGSDHAP IGGNEFMNSP PPLLGPSTTT TTTTSWPTDY  180
NQDILQYAQL LTSNNDVDLS YYTSSLFSSQ QQPFSTPSSS SSSSLNSQQM QQQQQREEEK  240
NYGYNYYYYP RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2870131163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530350.0AK353035.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125903.11e-131PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9LYU34e-82EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A3P6A6A11e-130A0A3P6A6A1_BRACM; Uncharacterized protein
TrEMBLM4E3Q11e-130M4E3Q1_BRARP; Uncharacterized protein
STRINGBra023404.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-54related to AP2 6l
Publications ? help Back to Top
  1. Huang Z,Zhao P,Medina J,Meilan R,Woeste K
    Roles of JnRAP2.6-like from the transition zone of black walnut in hormone signaling.
    PLoS ONE, 2013. 8(11): p. e75857
    [PMID:24265672]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Matsuoka K, et al.
    RAP2.6L and jasmonic acid-responsive genes are expressed upon Arabidopsis hypocotyl grafting but are not needed for cell proliferation related to healing.
    Plant Mol. Biol., 2018. 96(6): p. 531-542
    [PMID:29344830]
  7. Yang S,Poretska O,Sieberer T
    ALTERED MERISTEM PROGRAM1 Restricts Shoot Meristem Proliferation and Regeneration by Limiting HD-ZIP III-Mediated Expression of RAP2.6L.
    Plant Physiol., 2018. 177(4): p. 1580-1594
    [PMID:29884678]