PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10305_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 86aa    MW: 9701.31 Da    PI: 11.1626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10305_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192372255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  RrC10305_p1 23 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 72
                 6******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132380IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-222381IPR016177DNA-binding domain
SMARTSM003802.1E-382386IPR001471AP2/ERF domain
PRINTSPR003671.9E-92435IPR001471AP2/ERF domain
CDDcd000188.89E-272482No hitNo description
PfamPF008476.4E-132472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-312481IPR001471AP2/ERF domain
PRINTSPR003671.9E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
METGAKVTAA TMGIGTRKRD LKPYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPEAAA  60
RAYDTAVFYL RGPSARLNFP ELLAGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172280463ATERF1
3gcc_A5e-172280463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743656.12e-56ethylene-responsive transcription factor ERF008-like
RefseqXP_018461524.12e-56PREDICTED: ethylene-responsive transcription factor ERF008-like
RefseqXP_018480993.12e-56PREDICTED: ethylene-responsive transcription factor ERF008
SwissprotO221743e-49ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A078HQ915e-55A0A078HQ91_BRANA; BnaA04g13590D protein
TrEMBLA0A3P6CFY45e-55A0A3P6CFY4_BRACM; Uncharacterized protein
STRINGBra032173.1-P3e-50(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]