PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10281_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 350aa    MW: 39518.4 Da    PI: 4.3317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10281_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19127176255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdp +   ++r +lg+f taeeAa  +++a+ +l+g
  RrC10281_p1 127 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAALVYDNAAIRLRG 176
                  89*******.**********732...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30126184IPR001471AP2/ERF domain
PROSITE profilePS5103223.868127184IPR001471AP2/ERF domain
PfamPF008477.0E-13127176IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21127185IPR016177DNA-binding domain
CDDcd000184.75E-34127183No hitNo description
SMARTSM003802.8E-40127190IPR001471AP2/ERF domain
PRINTSPR003673.1E-10128139IPR001471AP2/ERF domain
PRINTSPR003673.1E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDELQEYMDF RPLKYSEHKT SVTKYTKTSP ETRPDSVKIV RVSVTDPYAT DSSSDEEEEE  60
HDFLFPRRRV RRFVNEIRVE PGRNNDTDVA GGVSTKERKR LSSSPALASN RRRALKVSAT  120
SGQNGRKFRG VRQRPWGKWA AEIRDPEQKR RLWLGTFETA EEAALVYDNA AIRLRGPDAL  180
TNFSIPPEES EPEQLVNVKP ESNITTTTTT SCSESSEDFQ HVSSPTSVLN LQSSEEIQQP  240
FKSAKPEPEI SDAVWWHTGV SSGSGESDDS FMLDTQFLDN YFNESLPEFS MLDQPMGEVF  300
LENDIFGDTF LDGESMMNIG DDEFTTSSIK DIGSVFSEFD DSLISDLLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22125185364ATERF1
3gcc_A5e-22125185364ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474690.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-133CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A3N6RE221e-174A0A3N6RE22_BRACR; Uncharacterized protein
STRINGBra022643.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-115cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]