PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10208_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 21302.2 Da PI: 9.1916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d++++ G+g +W t +++ g++R++k+c++rw++yl RrC10208_p1 14 RGPWSPEEDAKLKDYIEKQGTGgNWITLPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.9e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+++ gRt++++k++w++ RrC10208_p1 69 GDFSEEEDYIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.432 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.65E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.155 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.77E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIT LPHKAGLRRC GKSCRLRWLN 60 YLRPNIRHGD FSEEEDYIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT 120 TAPQPHHLLA ITSSPSSSSP SSSSHYNMIN SLLPYDPSIS TNQLITPDRG MMTVMGPQQL 180 IYQEDMGSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519577 | 0.0 | AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474691.1 | 1e-140 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 1e-105 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A078IBY1 | 1e-115 | A0A078IBY1_BRANA; BnaA03g16870D protein | ||||
TrEMBL | A0A397ZW26 | 1e-115 | A0A397ZW26_BRACM; Uncharacterized protein | ||||
STRING | Bra023085.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 1e-101 | MYB family protein |
Publications ? help Back to Top | |||
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