PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10208_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 189aa    MW: 21302.2 Da    PI: 9.1916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10208_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d++++ G+g +W t +++ g++R++k+c++rw++yl
      RrC10208_p1 14 RGPWSPEEDAKLKDYIEKQGTGgNWITLPHKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding39.99.9e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +++  G++ W+ Ia+++  gRt++++k++w++
      RrC10208_p1  69 GDFSEEEDYIICSLFASIGSR-WSVIAAHLH-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.432962IPR017930Myb domain
SuperFamilySSF466896.27E-2711109IPR009057Homeodomain-like
SMARTSM007174.2E-111364IPR001005SANT/Myb domain
PfamPF002491.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231569IPR009057Homeodomain-like
CDDcd001673.65E-81662No hitNo description
PROSITE profilePS5129420.15563117IPR017930Myb domain
SMARTSM007171.3E-1067115IPR001005SANT/Myb domain
PfamPF002499.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2370118IPR009057Homeodomain-like
CDDcd001677.77E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIT LPHKAGLRRC GKSCRLRWLN  60
YLRPNIRHGD FSEEEDYIIC SLFASIGSRW SVIAAHLHGR TDNDIKNYWN TKLKKKLIAT  120
TAPQPHHLLA ITSSPSSSSP SSSSHYNMIN SLLPYDPSIS TNQLITPDRG MMTVMGPQQL  180
IYQEDMGSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195770.0AY519577.1 Arabidopsis thaliana MYB transcription factor (At2g36890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474691.11e-140PREDICTED: transcription factor RAX2-like
SwissprotQ9SJL71e-105RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A078IBY11e-115A0A078IBY1_BRANA; BnaA03g16870D protein
TrEMBLA0A397ZW261e-115A0A397ZW26_BRACM; Uncharacterized protein
STRINGBra023085.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-101MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]