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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC101_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 24173.3 Da PI: 9.933 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.8e-06 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RrC101_p2 96 FVCEICNKGFQRDQNLQLHKRGH 118 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.76E-7 | 95 | 118 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 95 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.4E-5 | 96 | 118 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.907 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 138 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 161 | 194 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.76E-7 | 168 | 193 | No hit | No description |
SMART | SM00355 | 180 | 173 | 193 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MMSKDILLHQ QVQQQQQENM SNLTSASGDQ TSVSSGNRTE ASGSNYFPHH QQQEQQQFFV 60 PESQPQKKRR NQPGNPDPES EVISLSPKTL MATNRFVCEI CNKGFQRDQN LQLHKRGHNL 120 PWKLKQRPNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFFRKHGE KKWKCDKCSK 180 KYAVQSDCKA HSKTCGTKEY RCDCGTIFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-20 | 169 | 210 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 7e-20 | 169 | 210 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 135 | KLKQRPNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361797 | 0.0 | AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. | |||
GenBank | AY091693 | 0.0 | AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018493474.1 | 1e-155 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493475.1 | 1e-155 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493476.1 | 1e-155 | PREDICTED: protein indeterminate-domain 11-like | ||||
Refseq | XP_018493477.1 | 1e-155 | PREDICTED: protein indeterminate-domain 11-like | ||||
Swissprot | Q9LRW7 | 1e-129 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A3P6FI34 | 1e-137 | A0A3P6FI34_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g134920.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-108 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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