PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10193_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 332aa    MW: 37813.6 Da    PI: 9.4084
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10193_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35351272103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++ +sw ++ ++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++i+
   RrC10193_p1  35 FLTKTYQLVDDPATDHAVSWGDDDTTFIVWRPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCEIH 122
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   RrC10193_p1 123 RRKTS 127
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3727119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5931124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-193558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAMMVENSYG YASGGTGERI QLMMEGQGKA VPAPFLTKTY QLVDDPATDH AVSWGDDDTT  60
FIVWRPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE  120
IHRRKTSQVI PNQHSPFITH HPSPQIPFSG GASFFSLPPR VDAATMDDHY WCESPPPRPR  180
VIPTTVDAQV TALTEDNERL RRNNTVLMSE LAHMKKLYND IIYFVQNHVK PVAPSNSNLP  240
SFLQKQQQQP PPLDYYNNAT VPNHSPPTSQ SSISVLEDET NHESNARKTK LFGVSLPSSK  300
KRSHNFSRQS SKTRLVLDNS DLGLNLRTAS TR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-233112717123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299303KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449180.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A078FXM00.0A0A078FXM0_BRANA; BnaC06g00310D protein
TrEMBLA0A3P6H1V60.0A0A3P6H1V6_BRAOL; Uncharacterized protein
STRINGBo6g008100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-179heat shock transcription factor B4